GWAS-related eQTLs across different cancer types
We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).
|
Cancer type
|
eQTL type
|
tagSNP
|
Gene position (hg19)
|
p-value
|
|||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| THYM | cis | rs9473555 | 1 | rs9473555 | chr6:49409487 | MUT | chr6:49398994-49431031:- | 0.27 | 4.32 | 3.89E-5 | Folate pathway vitamin levels |
| THYM | cis | rs9473555 | 1 | rs9473560 | chr6:49427918 | CENPQ | chr6:49431096-49460820:+ | -0.24 | -4.35 | 3.4E-5 | Folate pathway vitamin levels |
| THYM | cis | rs9473555 | 1 | rs9473561 | chr6:49428755 | CENPQ | chr6:49431096-49460820:+ | -0.25 | -4.33 | 3.64E-5 | Folate pathway vitamin levels |
| THYM | cis | rs9473555 | 1 | rs9473561 | chr6:49428755 | MUT | chr6:49398994-49431031:- | 0.28 | 4.21 | 5.84E-5 | Folate pathway vitamin levels |
| THYM | cis | rs9473555 | 1 | rs9473563 | chr6:49453651 | CENPQ | chr6:49431096-49460820:+ | -0.24 | -4.13 | 7.76E-5 | Folate pathway vitamin levels |
| THYM | cis | rs9473555 | 1 | rs9473563 | chr6:49453651 | MUT | chr6:49398994-49431031:- | 0.28 | 4.32 | 3.85E-5 | Folate pathway vitamin levels |
| THYM | cis | rs951366 | 1 | rs951366 | chr1:205685352 | PM20D1 | chr1:205797154-205819245:- | -0.49 | -4.44 | 2.47E-5 | Menarche (age at onset) |
| THYM | cis | rs2463822 | 1 | rs951677 | chr11:62107249 | ASRGL1 | chr11:62104774-62160885:+ | 0.55 | 5.44 | 4.17E-7 | Chronic obstructive pulmonary disease-related biomarkers |
| THYM | cis | rs9527 | 1 | rs9527 | chr10:104623578 | AS3MT | chr10:104613967-104661653:+ | -0.39 | -4.25 | 4.93E-5 | Arsenic metabolism |
| THYM | cis | rs1577917 | 1 | rs955196 | chr6:86729951 | SNHG5 | chr6:86386726-86388451:- | 0.57 | 6.84 | 7.81E-10 | Response to antipsychotic treatment |
| THYM | cis | rs1577917 | 1 | rs955197 | chr6:86729675 | SNHG5 | chr6:86386726-86388451:- | -0.57 | -6.96 | 4.28E-10 | Response to antipsychotic treatment |
| THYM | cis | rs1577917 | 1 | rs955227 | chr6:86651032 | SNHG5 | chr6:86386726-86388451:- | -0.61 | -7.35 | 6.78E-11 | Response to antipsychotic treatment |
| THYM | cis | rs2243480 | 1 | rs958550 | chr7:65635679 | CCT6P1 | chr7:65216092-65228661:+ | -0.61 | -5.15 | 1.42E-6 | Diabetic kidney disease |
| THYM | cis | rs1930961 | 1 | rs9624834 | chr22:25846015 | CRYBB2 | chr22:25615612-25627836:+ | 1.07 | 7.06 | 2.73E-10 | Bipolar disorder with mood-incongruent psychosis |
| THYM | cis | rs1930961 | 1 | rs9624835 | chr22:25846021 | CRYBB2 | chr22:25615612-25627836:+ | 1.07 | 7.06 | 2.73E-10 | Bipolar disorder with mood-incongruent psychosis |